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-rw-r--r--gnu/packages/maths.scm107
1 files changed, 54 insertions, 53 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index f4edd546e2..2106d73ef1 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2303,44 +2303,45 @@ similar to MATLAB, GNU Octave or SciPy.")
(native-inputs
(list m4 doxygen graphviz))
(inputs
- `(("curl" ,curl)
- ("hdf4" ,hdf4-alt)
- ("hdf5" ,hdf5)
- ("libjpeg" ,libjpeg-turbo)
- ("libxml2" ,libxml2)
- ("unzip" ,unzip)
- ("zlib" ,zlib)))
+ (list curl
+ hdf4-alt
+ hdf5
+ libjpeg-turbo
+ libxml2
+ unzip
+ zlib))
(arguments
- `(#:configure-flags '("--enable-doxygen"
- "--enable-dot"
- "--enable-hdf4"
- "--disable-dap-remote-tests")
+ (list #:configure-flags
+ #~'("--enable-doxygen" "--enable-dot"
+ "--enable-hdf4" "--disable-dap-remote-tests")
- #:phases (modify-phases %standard-phases
- (add-before 'configure 'fix-source-date
- (lambda _
- ;; As we ${SOURCE_DATE_EPOCH} evaluates to "1" in the build
- ;; environment, `date -u -d ${SOURCE_DATE_EPOCH}` will evaluate
- ;; to '1st hour of the current day', and therefore makes the
- ;; package not reproducible.
- (substitute* "./configure"
- (("date -u -d \"\\$\\{SOURCE_DATE_EPOCH\\}\"")
- "date --date='@0'"))))
- (add-after 'configure 'patch-settings
- (lambda _
- ;; libnetcdf.settings contains the full filename of the compilers
- ;; used to build the library. We truncate the hashes of those
- ;; filenames to avoid unnecessary references to the corresponding
- ;; store items.
- (substitute* "libnetcdf.settings"
- (("(/gnu/store/)([0-9A-Za-z]*)" all prefix hash)
- (string-append prefix (string-take hash 10) "...")))))
- (add-before 'check 'fix-test-rcmerge
- (lambda _
- ;; Set HOME, to fix the test-rcmerge test.
- (setenv "HOME" "/tmp"))))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'configure 'fix-source-date
+ (lambda _
+ ;; As we ${SOURCE_DATE_EPOCH} evaluates to "1" in the build
+ ;; environment, `date -u -d ${SOURCE_DATE_EPOCH}` will evaluate
+ ;; to '1st hour of the current day', and therefore makes the
+ ;; package not reproducible.
+ (substitute* "./configure"
+ (("date -u -d \"\\$\\{SOURCE_DATE_EPOCH\\}\"")
+ "date --date='@0'"))))
+ (add-after 'configure 'patch-settings
+ (lambda _
+ ;; libnetcdf.settings contains the full filename of the compilers
+ ;; used to build the library. We truncate the hashes of those
+ ;; filenames to avoid unnecessary references to the corresponding
+ ;; store items.
+ (substitute* "libnetcdf.settings"
+ (("(/gnu/store/)([0-9A-Za-z]*)" all prefix hash)
+ (string-append prefix
+ (string-take hash 10) "...")))))
+ (add-before 'check 'fix-test-rcmerge
+ (lambda _
+ ;; Set HOME, to fix the test-rcmerge test.
+ (setenv "HOME" "/tmp"))))
- #:parallel-tests? #f)) ;various race conditions
+ #:parallel-tests? #f)) ;various race conditions
(home-page "https://www.unidata.ucar.edu/software/netcdf/")
(synopsis "Library for scientific data")
(description "NetCDF is an interface for scientific data access and a
@@ -2382,29 +2383,29 @@ Unidata's NetCDF, files in classic formats, specifically the formats of CDF-1, 2
(license (license:x11-style "file://COPYRIGHT"))))
(define-public netcdf-parallel-openmpi
- (package (inherit netcdf)
+ (package/inherit netcdf
(name "netcdf-parallel-openmpi")
- (inputs
- `(("mpi" ,openmpi)
- ("pnetcdf" ,pnetcdf)
- ,@(alist-replace "hdf5" (list hdf5-parallel-openmpi)
- (package-inputs netcdf))))
+ (inputs (modify-inputs (package-inputs netcdf)
+ (append openmpi pnetcdf)
+ (replace "hdf5" hdf5-parallel-openmpi)))
;; TODO: Replace pkg-config references in nc-config with absolute references
(arguments
(substitute-keyword-arguments (package-arguments netcdf)
((#:configure-flags flags)
- `(cons* "CC=mpicc" "CXX=mpicxx"
- "--enable-parallel-tests"
- ;; Enable support of CDF-1, 2 and 5 formats.
- "--enable-pnetcdf"
- ;; NetCDF supports both parallel and shared library building
- ;; See https://docs.unidata.ucar.edu/nug/current/getting_and_building_netcdf.html#build_parallel
- "--enable-shared" "--with-pic"
- ,flags))
- ((#:phases phases '%standard-phases)
- `(modify-phases ,phases
- (add-after 'build 'mpi-setup
- ,%openmpi-setup)))))))
+ #~(cons* "CC=mpicc"
+ "CXX=mpicxx"
+ "--enable-parallel-tests"
+ ;; Enable support of CDF-1, 2 and 5 formats.
+ "--enable-pnetcdf"
+ ;; NetCDF supports both parallel and shared library building
+ ;; See https://docs.unidata.ucar.edu/nug/current/getting_and_building_netcdf.html#build_parallel
+ "--enable-shared"
+ "--with-pic"
+ #$flags))
+ ((#:phases phases #~%standard-phases)
+ #~(modify-phases #$phases
+ (add-after 'build 'mpi-setup
+ #$%openmpi-setup)))))))
(define-public netcdf-fortran
(package